Tree-puzzle version 5.2 - How to Download and Install on Mac OS X
Saturday the 7th of November, 2009

    tree-puzzle  most recent diff


    version 5.2

      View the most recent changes for the tree-puzzle port at: tree-puzzle.darwinports.com/diff
      Scroll down toward the bottom of the page to get installation instructions for tree-puzzle.
      The raw portfile for tree-puzzle 5.2 is located here:
      http://tree-puzzle.darwinports.com/dports/science/tree-puzzle/Portfile
      Find related portfiles with the unique DarwinPorts.com search feature.
      Check for any related Fink projects here: pdb.finkproject.org/pdb/package.php/tree-puzzle


      The tree-puzzle Portfile 50984 2009-05-14 21:08:43Z and.damore macports.org $

      PortSystem 1.0
      Name: tree-puzzle
      Version: 5.2
      Category: science
      Platform: darwin
      Maintainers: mac.com:mrt5
      Description: a computer program to reconstruct phylogenetic trees from molecular sequence data by maximum likelihood
      Long Description: TREE-PUZZLE is a computer program to reconstruct phylogenetic trees from molecular sequence data by maximum likelihood. It implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch.

      Homepage: http://www.tree-puzzle.de
      Master Sites: http://www.tree-puzzle.de/
      Checksums: md5 20fa9606434ddc789670e681d98fe68f


    If you haven't already installed Darwin Ports, you can find easy instructions for doing so at the main Darwin Ports page.

    Once Darwin Ports has been installed, in a terminal window and while online, type the following and hit return:


      %  cd /opt/local/bin/portslocation/dports/tree-puzzle
      % sudo port install tree-puzzle
      Password:
    You will then be prompted for your root password, which you should enter. You may have to wait for a few minutes while the software is retrieved from the network and installed for you. Y ou should see something that looks similar to:

      ---> Fetching tree-puzzle
      ---> Verifying checksum for tree-puzzle
      ---> Extracting tree-puzzle
      ---> Configuring tree-puzzle
      ---> Building tree-puzzle with target all
      ---> Staging tree-puzzle into destroot
      ---> Installing tree-puzzle
    - Make sure that you do not close the terminal window while Darwin Ports is working. Once the software has been installed, you can find further information about using tree-puzzle with these commands:
      %  man tree-puzzle
      % apropos tree-puzzle
      % which tree-puzzle
      % locate tree-puzzle

     Where to find more information:

    Darwin Ports



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